Publications
Modeling the Role of Lanthionine Synthetase C-Like 2 (LANCL2) in the Modulation of Immune Responses to Helicobacter pylori Infection
Leber A, Bassaganya-Riera J, Tubau-Juni N, Zoccoli-Rodriguez V, Viladomiu M, Abedi V, Lu P, Hontecillas R
PloS one
2016 Dec 9;11(12)
PMID: 27936058
Modeling the Mechanisms by Which HIV-Associated Immunosuppression Influences HPV Persistence at the Oral Mucosa.
Verma M*, Erwin S*, Abedi V, Hontecillas R, Hoops S, Leber A, Bassaganya-Riera J, Ciupe SM. *Contributed equally to this work.
PloS one
2017 Jan 6;12(1)
PMID: 28060843
Novel Screening Tool for Stroke Using Artificial Neural Network
Abedi V, Goyal N, Tsivgoulis G, Hosseinichimeh N, Hontecillas R, Bassaganya-Riera J, Elijovich L, Metter JE, Alexandrov AW, Liebeskind DS, Alexandrov AV
Stroke
2017 Jun 1;48(6):1678-1681
PMID: 28438906
Modeling new immunoregulatory therapeutics as antimicrobial alternatives for treating Clostridium difficile infection
Leber A, Hontecillas R, Abedi V, Tubau-Juni N, Zoccoli-Rodriguez V, Stewart C, Bassaganya-Riera J
Artificial Intelligence in Medicine
2017 May 31;78:1-13
PMID: 28764868
Solving Immunology? Trends in Immunology
Vodovotz Y, Xia A, Read EL, Bassaganya-Riera J, Hafler DA, Sontag E, Wang J, Tsang JS, Day JD, Kleinstein SH, Butte AJ, Altman MC, Hammond R, Sealfon SC.
Trends in Immunology
2017 Feb 1;38(2):116-127
PMID: 27986392
Modeling-Enabled Systems Nutritional Immunology.
Verma M., R. Hontecillas, V. Abedi, A. Leber, N.T. Juni, C. Philipson, A. Carbo, J. Bassaganya-Riera
Frontiers in Nutrition, section Nutritional Immunology
2016 Feb 16;3
PMID: 26909350
Modeling-Enabled Characterization of Novel NLRX1 Ligands.
Lu P, Hontecillas R, Abedi V, Kale S, Leber A, Heltzel C, Langowski M, Godfrey V, Philipson C, Tubau-Juni N, Carbo A, Girardin S, Uren A, Bassaganya-Riera J.
PLoS One
2015 Dec 29;10(12)
PMID: 26714018
Modeling the Regulatory Mechanisms by Which NLRX1 Modulates Innate Immune Responses to Helicobacter pylori Infection.
Philipson CW, Bassaganya-Riera J, Viladomiu M, Kronsteiner B, Abedi V, Hoops S, Michalak P, Kang L, Girardin SE, Hontecillas R.
PLoS One
2015 Sep 14;10(9)
PMID: 26367386
ENISI SDE: A New Web-Based Tool for Modeling Stochastic Processes.
Mei Y, Carbo A, Hoops S, Hontecillas R, Bassaganya-Riera J.
IEEE/ACM Trans Comput Biol Bioinform
2015 Mar 1;12(2):289-97
PMID: 26357217
Supervised learning methods in modeling of CD4+ T cell heterogeneity.
Lu P, Abedi V, Mei Y, Hontecillas R, Hoops S, Carbo A, Bassaganya-Riera J.
BioData Min
2015 Sep 4;8(27)
PMID: 26339293
Multiscale modeling of mucosal immune responses.
Mei Y, Abedi V, Carbo A, Zhang X, Lu P, Philipson C, Hontecillas R, Hoops S, Liles N, Bassaganya-Riera J.
BMC Bioinformatics
2015 Jan 1;16(Suppl 12)
PMID: 26329787
Sensitivity Analysis of an ENteric Immunity SImulator (ENISI)-Based Model of Immune Responses to Helicobacter pylori Infection.
Alam M, Deng X, Philipson C, Bassaganya-Riera J, Bisset K, Carbo A, Eubank S, Hontecillas R, Hoops S, Mei Y, Abedi V, Marathe M.
PLoS One
2015 Sep 1;10(9)
PMID: 26327290
Systems Modeling of Interactions between Mucosal Immunity and the Gut Microbiome during Clostridium difficile Infection.
Leber A, Viladomiu M, Hontecillas R, Abedi V, Philipson C, Hoops S, Howard B, Bassaganya-Riera J.
PLoS One
2015 Jul 31;10(7)
PMID: 26230099
Computational modeling of heterogeneity and function of CD4+ T cells.
Carbo A, Hontecillas R, Andrew T, Eden K, Mei Y, Hoops S, Bassaganya-Riera J.
Front Cell Dev Biol
2014 Jul 29;2(31)
PMID: 25364738
Systems modeling of the role of interleukin-21 in the maintenance of effector CD4+ T cell responses during chronic Helicobacter pylori infection.
Carbo A, Olivares-Villagómez D, Hontecillas R, Bassaganya-Riera J, Chaturvedi R, Piazuelo MB, Delgado A, Washington MK, Wilson KT, Algood HM.
MBio
2014 Jul 22;5(4):e01243-14
PMID: 25053783
Predictive computational modeling of the mucosal immune responses during Helicobacter pylori infection.
Carbo A, Bassaganya-Riera J, Pedragosa M, Viladomiu M, Marathe M, Eubank S, Wendelsdorf K, Bisset K, Hoops S, Deng X, Alam M, Kronsteiner B, Mei Y, Hontecillas R.
PLoS One
2013 Sep 5;8(9)
PMID: 24039925
Systems modeling of molecular mechanisms controlling cytokine-driven CD4+ T cell differentiation and phenotype plasticity.
Carbo A, Hontecillas R, Kronsteiner B, Viladomiu M, Pedragosa M, Lu P, Philipson CW, Hoops S, Marathe M, Eubank S, Bisset K, Wendelsdorf K, Jarrah A, Mei Y, Bassaganya-Riera J.
PLoS Comput Biol
2013 Apr 1;9(4)
PMID: 23592971
Modeling the role of peroxisome proliferator-activated receptor y and microRNA-146 in mucosal immune responses to Clostridium difficile.
Viladomiu M, Hontecillas R, Pedragosa M, Carbo A, Hoops S, Michalak P, Michalak K, Guerrant RL, Roche JK, Warren CA, Bassaganya-Riera J.
PLoS One
2012 Jan 1;7(10)
PMID: 23071818
ENteric Immunity SImulator: a tool for in silico study of gastroenteric infections.
Wendelsdorf KV, Alam M, Bassaganya-Riera J, Bisset K, Eubank S, Hontecillas R, Hoops S, Marathe M.
IEEE Trans Nanobioscience
2012 Jan 1;11(3):273-88
PMID: 22987134
Computational modeling-based discovery of novel classes of anti-inflammatory drugs that target lanthionine synthetase C-like protein 2.
Lu P, Hontecillas R, Horne WT, Carbo A, Viladomiu M, Pedragosa M, Bevan DR, Lewis SN, Bassaganya-Riera J.
PLoS One
Jan 1;7(42012)
PMID: 22509338
Molecular modeling of lanthionine synthetase component C-like protein 2: a potential target for the discovery of novel type 2 diabetes prophylactics and therapeutics.
Lu P, Bevan DR, Lewis SN, Hontecillas R, Bassaganya-Riera J.
J Mol Model
2011 Jan 1;17(3):543-53
PMID: 20512604
Model of colonic inflammation: immune modulatory mechanisms in inflammatory bowel disease.
Wendelsdorf K, Bassaganya-Riera J, Hontecillas R, Eubank S.
J Theor Biol
2010 Jan 1;264(4):1225-39
PMID: 20362587
Virtual Screening as a Technique for PPAR Modulator Discovery.
Lewis SN, Bassaganya-Riera J, Bevan DR.
PPAR Res
2010 Jan 1
PMID: 19746174